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PROPHECY(1e) EMBOSS Manual for Debian PROPHECY(1e)

prophecy - Create frequency matrix or profile from a multiple alignment

prophecy -sequence seqset -type list -datafile matrixf -name string -threshold integer -open float -extension float -outfile outfile

prophecy -help

prophecy is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Profiles,Protein:Profiles" command group(s).

-sequence seqset

-type list

Default value: F

-datafile matrixf

Default value: @($(type) = G: Epprofile H: EBLOSUM62 F: EBLOSUM62)

-name string

Default value: mymatrix

-threshold integer

Default value: 75

-open float

Default value: 3.0

-extension float

Default value: 0.3

-outfile outfile

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

prophecy is fully documented via the tfm(1) system.

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

05/11/2012 EMBOSS 6.4.0