NAME

alignment-info - Show useful statistics about the alignment.

SYNOPSIS

alignment-info alignment-file [tree-file] [OPTIONS]

DESCRIPTION

Show useful statistics about the alignment.

ALLOWED OPTIONS:

-h, –help

produce help message

–align arg

file with sequences and initial alignment

–tree arg

file with initial tree

–alphabet arg

specify the alphabet: DNA, RNA, Amino-Acids, Triplets, or Codons

-N, –show-names

Print the sequence-names and exit

-L, –show-lengths

Print the sequence-lengths and exit

REPORTING BUGS:

BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

Please send bug reports to <bali-phy-users@googlegroups.com>.

AUTHORS

Benjamin Redelings.