section 1p — User commands

acdcheck(1p)
ack(1p) grep-like text finder
add_bug_to_estraier(1p) - add a bug log to an estraier database
add_tradis_tags(1p) check if tr tag is present
alien(1p) Convert or install an alien binary package
all-knowing-dns(1p) Tiny DNS server for IPv6 Reverse DNS
alleleCounter.pl(1p) Generate tab seperated file with allelic counts and depth for each specified locus.
alleleCounterToJson.pl(1p) Generate JSON format file from the tab seperated format
altree(1p) Association and Localisation tests using phylogenetic Trees
altree-add-S(1p) Title...
altree-convert(1p) Title...
annex-to-annex(1p) use hardlinks to migrate files between git annex repos
annex-to-annex-dropunused(1p) drop old hardlinks migrated by annex-to-annex
annex-to-annex-reinject(1p) use 'git annex reinject' to redo annex-to-annex
appendpdf(1p) Append one PDF to another
apply_diff_relay_logs(1p) Generating differential relay logs between the latest slave and target slave, and applying all binlog/relay log files. This command is automatically executed from MHA Manager on failover, and manual execution should not be needed normally.
applypatch(1p) apply 'makepatch' generated script to update a source tree
apt-show-source(1p) Lists source-packages.
apt-show-versions(1p) Lists available package versions with distribution
apt-src(1p) manage debian source package trees
argon2-calibrate(1p) a script to find the appropriate argon2 parameters
asp-perl(1p) Apache::ASP CGI and command line script processor
ATR_analysis(1p) analyse a smart card ATR
audio_rename(1p) rename an audio file via information got via MP3::Tag.
authorized-keys-test(1p) Validate a authorized_keys file
autodia(1p) a perl script using the Autodia modules to create UML Class Diagrams or documents. from code or other data sources.
AutoSearch(1p) - a web-search tracking application
average_genome_size(1p) Calculate the average genome size (in bp) of species in a Grinder library
bacteria_tradis(1p) Perform full tradis analysis
basepods(1p) print out pod paths for the standard perl manpages
bdf2gdfont(1p) Convert X11 "BDF" fonts into a loadable font format for GD.
bed2gff3(1p) Convert UCSC Genome Browser-format gene files into GFF files suitable for loading into gbrowse
biber(1p) A bibtex replacement for users of biblatex
blhc(1p) build log hardening check, checks build logs for missing hardening flags
bot-basicbot-pluggable(1p) A standard Bot::BasicBot::Pluggable script
bot-training(1p) Command-line interface Bot::Training
boxer(1p) boxer command line utils
bp_aacomp(1p) amino acid composition of protein sequences
bp_biblio(1p) bioperl client for accessing and querying a bibliographic repository
bp_biofetch_genbank_proxy(1p) Caching BioFetch-compatible web proxy for GenBank
bp_bioflat_index(1p) index sequence files using Bio::DB::Flat
bp_biogetseq(1p) sequence retrieval using OBDA registry
bp_bulk_load_gff(1p) Bulk-load a Bio::DB::GFF database from GFF files.
bp_dbsplit(1p) script to split an input set of database(s) into smaller pieces
bp_download_query_genbank(1p) script to query Genbank and retrieve records
bp_einfo(1p) Query einfo to find all available databases or information about a specific database (field information or links to other NCBI databases).
bp_extract_feature_seq(1p) extract the corresponding sequence for a specified feature type
bp_fast_load_gff(1p) Fast-load a Bio::DB::GFF database from GFF files.
bp_fastam9_to_table(1p) turn FASTA -m 9 output into NCBI -m 9 tabular output
bp_fetch(1p) fetches sequences from bioperl indexed databases
bp_filter_search(1p) filters searchio results, outputting a tab delimited summary
bp_find-blast-matches(1p) extract DNA sequences based on BLAST hits
bp_flanks(1p) finding flanking sequences for a variant in a sequence position
bp_gccalc(1p) GC content of nucleotide sequences
bp_genbank2gff(1p) Load a Bio::DB::GFF database from GENBANK files.
bp_genbank2gff3(1p) - Genbank->gbrowse-friendly GFF3
bp_genbank_ref_extractor(1p) Retrieves all related sequences for a list of searches on Entrez gene
bp_generate_histogram(1p) - Generate a histogram of Bio::DB::GFF features
bp_hmmer_to_table.pl(1p) turn HMMER output into tabular format
bp_index(1p) indexes files for use by bp_fetch.pl
bp_load_gff(1p) Load a Bio::DB::GFF database from GFF files.
bp_local_taxonomydb_query(1p) query a local TaxonomyDB for species or taxonid
bp_make_mrna_protein(1p) Convert an input mRNA/cDNA sequence into protein
bp_mask_by_search(1p) mask sequence(s) based on its alignment results
bp_meta_gff(1p) Get/set Bio::DB::GFF meta-data
bp_mrtrans(1p) implement a transformer of alignments from protein to mrna coordinates
bp_multi_hmmsearch.pl(1p) perform a hmmsearch into multiple FASTA files using an INDEX file
bp_mutate(1p) randomly mutagenize a single protein or DNA sequence
bp_nexus2nh(1p) convert nexus format trees (from PAUP* and MrBayes) to new hampshire
bp_nrdb(1p) a script to emulate Warren Gish's nrdb, make a unique sequence database from a set of input databases
bp_oligo_count(1p) oligo count and frequency
bp_pairwise_kaks(1p) calculate pairwise Ka, Ks for a set of sequences
bp_panalysis.pl(1p) An example/tutorial script how to access analysis tools
bp_papplmaker.pl(1p) Analysis tools module generator
bp_parse_hmmsearch.pl(1p) parse single/multiple HMMSEARCH results file(s) with different output options
bp_process_gadfly(1p) Massage Gadfly/FlyBase GFF files into a version suitable for the Generic Genome Browser
bp_process_sgd(1p) Massage SGD annotation flat files into a version suitable for the Generic Genome Browser
bp_process_wormbase.pl(1p) Massage WormBase GFF files into a version suitable for the Generic Genome Browser
bp_query_entrez_taxa(1p) query Entrez taxonomy database and print out information
bp_remote_blast.pl(1p) script for submitting jobs to a remote blast server (ncbi blast queue at this time)
bp_revtrans-motif(1p) Reverse translate a Profam-like protein motif
bp_run_neighbor.pl(1p) run Phylip's 'neighbor' program through Bioperl
bp_run_protdist.pl(1p) run Phylip's 'protdist' program through Bioperl
bp_search2alnblocks(1p) Turn SearchIO parseable reports(s) into a set of aligned blocks
bp_search2gff(1p) turn a SearchIO report into GFF
bp_search2table(1p) turn SearchIO parseable reports into tab delimited format like NCBI's -m 9
bp_search2tribe(1p) Turn SearchIO parseable reports(s) into TRIBE matrix
bp_seq_length(1p) lists the number of bases and number of sequences in specified sequence database files
bp_seqconvert(1p) generic BioPerl sequence format converter
bp_seqcut(1p) cut FASTA sequences with a given range
bp_seqfeature_load(1p) Load GFF into a SeqFeature database
bp_seqpart(1p) Takes one or more sequence files and splits them into a number of load balanced files.
bp_seqret(1p) bioperl implementation of sequence fetch from local db (like EMBOSS seqret)
bp_seqretsplit(1p) split a sequence (or stream) into a single file per sequence
bp_split_seq(1p) splits a sequence into equal sized chunks with an optional overlapping range
bp_sreformat(1p) convert sequence formats
bp_taxid4species(1p) simple script which returns the NCBI Taxonomic id for a requested species
bp_taxonomy2tree(1p) Building a taxonomic tree based on the full lineages of a set of species names
bp_translate_seq(1p) translates a sequence
bp_tree2pag(1p) convert Bio::TreeIO parseable format trees to pagel format
bp_unflatten_seq(1p) unflatten a genbank or genbank-style feature file into a nested SeqFeature hierarchy
bucardo(1p) utility script for controlling the Bucardo program
catalyst.pl(1p) Bootstrap a Catalyst application
catmandu(1p) LibreCat command line tools
ccconfig(1p) Get Convert::Binary::C configuration for a compiler
ccdiff(1p) Colored Character diff
ccon(1p) Cluster administration tool
Ceni(1p) Curses /etc/network/interfaces
cgiapp-starter(1p) creates a skeleton CGI::Application project
chalow(1p) weblog tool that converts ChangeLog to HTML
change_paired_read_orientation(1p) Change the orientation of paired-end reads in a FASTA file
changepagestring(1p) Search and replace in all PDF pages
changepdfstring(1p) Search and replace in PDF metadata
changerefkeys(1p) Search and replace PDF object numbers in the Trailer
chartex(1p) A utility to extract charts from an Excel file for insertion into a Spreadsheet::WriteExcel file.
check_perldiag(1p) check a localized version of perldiag for consistency
check_postgres(1p) a Postgres monitoring script for Nagios, MRTG, Cacti, and others
check_tradis_tags(1p) check if tr tag is present
checkdigits.pl(1p) check or generate check digits
checklink(1p) check the validity of links in an HTML or XHTML document
chemonomatopist(1p) derive IUPAC systematic names for chemical structures
circle-fe-term(1p) circle-fe-term
cleo(1p) Play back shell commands for live demonstrations
clipaccumulate(1p) Make a bunch of little clipboards into one big one.
clipbrowse(1p) Load a URL from the clipboard into your browser.
clipedit(1p) Edit clipboard contents in one swoop.
clipfilter(1p) Run various conversions for your clipboard data.
clipjoin(1p) Remove superfluous spaces from the clipboard.
cme(1p) Check or edit configuration data with Config::Model
color_matrix(1p) a matrix of available colors from Term::ExtendedColor
colored_dmesg(1p) colorize the dmesg output
colorfg(1p) color each line of input according to spec
combine_tradis_plots(1p) Combine multiple plotfiles and generate updated statistics for the combined files
compile_encoding(1p) compile XML encmap into a binary encoded file for XML::Parser
config_data(1p) Query or change configuration of Perl modules
connect-tunnel(1p) Create CONNECT tunnels through HTTP proxies
contig_draw(1p) - Render a SearchIO parser report into a simple overview graphic
convertConfig(1p) A tool to migrate Lemonldap::NG configuration database to a new backend.
convertSessions(1p) A tool to convert Lemonldap::NG sessions between storage backends.
copylink(1p) replace a link with a copy of the linked file
corelist(1p) a commandline frontend to Module::CoreList
corona(1p) Corona launcher
counterproc(1p) process a COUNTER report
countperl(1p) count lines, packages, subs, and complexity of Perl files.
cover(1p) report coverage statistics
cpan-audit(1p) Audit CPAN modules
cpan-listchanges(1p) List changes for CPAN modules
cpan-outdated(1p) detect outdated CPAN modules in your environment
cpan-upload(1p) upload a distribution to the CPAN
cpan2dist(1p) The CPANPLUS distribution creator
cpan2doap(1p) generate DOAP data from a CPAN distribution's root directory
cpancover(1p) report coverage statistics on CPAN modules
cpandb(1p) interface to "CPAN::SQLite"
cpanel_json_xs(1p) Cpanel::JSON::XS commandline utility
cpanfile-dump(1p) Dump prerequisites from a cpanfile
cpangraph(1p) Generate dependency chain graphs for CPAN modules
cpaninject(1p) Inject a distribution for installation via the CPAN shell
cpanm(1p) get, unpack build and install modules from CPAN
cpanp(1p) The CPANPLUS launcher
cpansign(1p) CPAN signature management utility
cpants_lint(1p) commandline frontend to Module::CPANTS::Analyse
cpio-filter(1p) transform a cpio archive
create_pan_genome(1p) Create a pan genome from a set of GFF files with WTSI defaults
create_pan_genome_plots(1p) Create R plots
crsh(1p) Cluster administration tool
crunchjpgs(1p) Compress all JPG images in a PDF
csftp(1p) Cluster administration tool
cssh(1p) Cluster administration tool
cssort(1p) - Czech sort
cstocs(1p) - charset encoding convertor for the Czech and Slovak languages.
csv2pdf(1p) A simple but yet powerful LaTeX::Table example application.
ctel(1p) Cluster administration tool
cufilter(1p) Filter emails through Mail::CheckUser
cyradm(1p) Cyrus administration shell, alter ego of Cyrus::IMAP::Shell
dancer(1p) helper script to create new Dancer applications
dancer2(1p) Dancer2 command line interface
data-viewer(1p) Open a data viewer widget for you JSON or YAML data
dave(1p) DAV Explorer
dbf_dump(1p) Dump the record of the dbf file
dbfcstocs(1p) - charset conversion of dbf files
dbic_form_generator(1p) Generate HTML form from DB schema with DBIC
dbicadmin(1p) utility for administrating DBIx::Class schemata
dbicdump(1p) Dump a schema using DBIx::Class::Schema::Loader
dbilogstrip(1p) filter to normalize DBI trace logs for diff'ing
dbiprof(1p) command-line client for DBI::ProfileData
dbiproxy(1p) A proxy server for the DBD::Proxy driver
dbs_dumptabdata(1p) Creates file set with SQL table data
dbs_dumptabstruct(1p) Creates file set with SQL table schemas
dbs_empty(1p) Empty SQL Databases
dbs_printtab(1p) Prints SQL table data on standard output
dbs_update(1p) Update SQL Databases
deb-systemd-helper(1p) subset of systemctl for machines not running systemd
deb-systemd-invoke(1p) wrapper around systemctl, respecting policy-rc.d
debaux-build(1p) Debian package building script
debaux-publish(1p) Debian package publishing script
debsigs(1p) process signatures in .deb packages
debsigs-autosign(1p) batch-sign Debian package files
debsigs-installer(1p) process signatures in .deb packages
debsigs-signchanges(1p) cryptographically sign Debian packages based on package changes file
deillustrate(1p) Remove Adobe Illustrator metadata from a PDF file
deletepdfpage(1p) Remove one or more pages from a PDF
dh-make-perl(1p) Create debian source packages from Perl modules
dh-make-raku(1p) Create debian source package from Raku module
dh_cme_upgrade(1p) add cme based configuration merge
dh_golang(1p) Generates Static-Built-Using substvar for Go programs
dh_nodejs_autodocs(1p) automatically install components doc files
dh_nodejs_build_debug_package(1p) automatically move sourcemap files into a separate debug package.
dh_nodejs_substvars(1p) automatically calculates ${package::Version} substitution variable
dh_ppp(1p) calculate ppp dependencies
dh_strip_nondeterminism(1p) strip uninteresting, nondeterministic information from files
distinkt-dist(1p) build a tarball for a Dist::Inkt-based distribution
distinkt-travisyml(1p) build a Travis-CI config file for a Dist::Inkt-based distribution
dkimproxy-sign(1p) computes a DKIM signature for an email message
dkimproxy-verify(1p) verifies DKIM signatures on an email message
dl10n-html(1p) - crawl translator mailing lists (and BTS) for status updates
dl10n-mail(1p) - translator mailing lists (and BTS) robot for status updates
dl10n-spider(1p) - crawl translator mailing lists (and BTS) for status updates
dmarc_lookup(1p) look up DMARC policy for a domain
dmarc_receive(1p) receive aggregate reports via IMAP, mbox, or message file(s)
dmarc_send_reports(1p) send aggregate reports
dmarc_update_public_suffix_list(1p) command line tool to download updated public suffix list
dmarc_view_reports(1p) view the contents of the DMARC data store
docknot(1p) Static web site and documentation generator
downloadosmtiles(1p) Download map tiles from OpenStreetMap
dprofpp(1p) display perl profile data
dtddiff(1p) Compare two SGML/XML DTDs
dtddiff2html(1p) Convert DTD difference to HTML.
dtdflatten(1p) Flatten an SGML/XML DTD.
dtdformat(1p) Read a DTDParse XML file and produce formatted documentation
dtdparse(1p) Generate an XML representation of an SGML or XML DTD.
dump-perl-exports(1p) A command line utility for describing what a class exports
dump_index(1p) dump the contents of an index
ebook(1p) create and manipulate e-books from the command line
ecaccess(1p)
ecaccess-association-delete(1p) Delete Association
ecaccess-association-get(1p) Get the Association Descriptive File
ecaccess-association-list(1p) List your ECtrans Associations
ecaccess-association-protocol(1p) List the supported ECtrans Protocols
ecaccess-association-put(1p) Update/Create an Association
ecaccess-certificate-create(1p) Create Certificate for the ECtools
ecaccess-certificate-list(1p) List Available Operations
ecaccess-cosinfo(1p) Display ConsInfo from ECMWF
ecaccess-ectrans-delete(1p) Delete ECtrans
ecaccess-ectrans-list(1p) List all ECtrans transfers
ecaccess-ectrans-request(1p) Request a new ECtrans transfer
ecaccess-ectrans-restart(1p) Restart an existing ECtrans transfer
ecaccess-event-clear(1p) Clear an ECaccess Event
ecaccess-event-create(1p) Create an ECaccess Event
ecaccess-event-delete(1p) Delete an ECaccess Event
ecaccess-event-grant(1p) Grant usage of an ECaccess Event
ecaccess-event-list(1p) List available events
ecaccess-event-send(1p) Trigger an ECaccess Event
ecaccess-file-chmod(1p) Change ECaccess File Mode Bits
ecaccess-file-copy(1p) Copy an ECaccess File
ecaccess-file-delete(1p) Remove an ECaccess File
ecaccess-file-dir(1p) List ECaccess Directory Contents
ecaccess-file-get(1p) Download an ECaccess File
ecaccess-file-mdelete(1p) Delete Multiple ECaccess Files at once
ecaccess-file-mget(1p) Download Multiple ECaccess Files at once
ecaccess-file-mkdir(1p) Make a Directory on the ECaccess File System
ecaccess-file-modtime(1p) Show the Last Modification Time of an ECaccess File
ecaccess-file-move(1p) Move or Rename ECaccess Files
ecaccess-file-mput(1p) Upload Multiple Local Files on the ECaccess File System at once
ecaccess-file-put(1p) Upload a File on the ECaccess File System
ecaccess-file-rmdir(1p) Remove a Directory on the ECaccess File System
ecaccess-file-size(1p) Show the Size of an ECaccess File
ecaccess-gateway-connected(1p) Display the ECaccess Gateway Connection Status
ecaccess-gateway-list(1p) List the ECaccess Gateways
ecaccess-gateway-name(1p) Display the name of the default ECaccess Gateway
ecaccess-job-delete(1p) Delete an ECaccess Job
ecaccess-job-get(1p) Download a Job Output/Input/Error File
ecaccess-job-list(1p) List all ECaccess Jobs
ecaccess-job-restart(1p) Restart an ECaccess Job
ecaccess-job-submit(1p) Submit a new ECaccess Job
ecaccess-queue-list(1p) List available queues
efa(1p) Command line client for EFA-based public transit routing services
elixir-column(1p) reformat 'elixir resolve' output
elixir-compose(1p) reformat 'elixir compose' output
elixir-resolve(1p) Arabic morphological analyzer derived from ElixirFM
Eliza(1p) eliza module
encryptTotpSecrets(1p) A tool to encrypt existing TOTP secrets
envassert(1p) Ensure that the environment variables match what you need, or abort.
envpath(1p) Advanced operations on path variables
exe_update(1p) Modify windows executable files
exiftool(1p) Read and write meta information in files
extract_proteome_from_gff(1p) Take in GFF files and output the proteome
extract_vba(1p) A utility to extract a VBA project from an Excel 2007+ xlsm file.
extractallimages(1p) Save copies of all PDF images to a directory
extractjpgs(1p) Save copies of all PDF JPG images to a directory
extrepo(1p) manage external Debian repositories
faqpods(1p) print out pod paths for the standard perl faqs
fatpack(1p) Command line frontend for App::FatPacker
feature_draw(1p) - Render a Bio::Graphics Feature File
feersum(1p) feersum app loader
file-rename(1p) renames multiple files
fillpdffields(1p) Replace PDF form fields with specified values
filter_mysqlbinlog(1p) Trimming ROLLBACK statements and equivalent BINLOG events added by mysqlbinlog. This script is now obsolete.
filter_tradis_tags(1p) filter tags at start of fastq sequences
findimagedupes(1p) Finds visually similar or duplicate images
findorule(1p) command line wrapper to File::Find::Object::Rule
findrule(1p) command line wrapper to File::Find::Rule
fingerw(1p) WWW::Finger command-line tool
fix_latin(1p) filters a data stream that is predominantly utf8 and 'fixes' any latin (ie: non-ASCII 8 bit) characters
flickr_dump_stored_config(1p) script to display contents of a Flickr::API storable configuration file.
flickr_make_stored_config(1p) script to assist with testing and using the Flickr::API
flickr_make_test_values(1p) script to assist with testing the Flickr::API
flickr_upload(1p) Upload photos to "flickr.com"
fpdns(1p) DNS server fingeprinting tool
frend(1p) - Render a Bio::Graphics Feature File on the web
frozen-bubble(1p) arcade/reflex game
frozen-bubble-editor(1p) a level editor for Frozen Bubble
ftp-upload(1p) batch transfer local files to an FTP server
fusioninventory-agent(1p) FusionInventory agent For Linux/UNIX, Windows and MacOSX
fusioninventory-esx(1p) vCenter/ESX/ESXi remote inventory from command line
fusioninventory-injector(1p) A tool to push inventory in an OCS Inventory or compatible server.
fusioninventory-inventory(1p) Standalone inventory
fusioninventory-netdiscovery(1p) Standalone network discovery
fusioninventory-netinventory(1p) Standalone network inventory
fusioninventory-remoteinventory(1p) A tool to pull inventory from an agent
fusioninventory-wakeonlan(1p) Standalone wake-on-lan
gbrowse_aws_balancer(1p) Load balance GBrowse using Amazon Web Service instances
gbrowse_clean(1p) Clean up sessions and other temporary gbrowse2 files
gbrowse_grow_cloud_vol(1p) Grow the GBrowse volume by the requested amount
gbrowse_sync_aws_slave(1p) Synchronize local file system to GBrowse slave volume.
gcov2perl(1p) convert gcov files to Devel::Cover databases
gearmand(1p) Gearman client/worker connector.
genome-music(1p)
get_root_domain(1p) Retrieve suffix info from a domain using Domain::PublicSuffix
getpdffontobject(1p) Print the PDF form field names
getpdfpage(1p) Print the PDF page layout commands
getpdfpageobject(1p) Print the PDF page metadata
getpdftext(1p) Extracts and print the text from one or more PDF pages
git-annex-reviewunused(1p) interactively process 'git annex unused' output
git-autofixup(1p) create fixup commits for topic branches
git-clean-forge-fork(1p) create tidy forks for pull requests
git-clean-forge-repo(1p) create repos on git forges with optional features disabled
git-nuke-forge-fork(1p) delete forks created by git-clean-forge-fork(1)
gitlab-api-v4(1p) Command line interface to the GitLab API v4.
glgrib-tk(1p) Perl/Tk interface to glGrib
gmail-imap-label(1p) IMAP proxy for Google's Gmail that retrieves message labels
gmod_add_organism.pl(1p) Adds an entry to the organism table
gmod_bulk_load_gff3.pl(1p) Bulk loads gff3 files into a chado database.
gmod_bulk_load_pubmed.pl(1p) stores pubmed entries in the database
gmod_chado_properties.pl(1p) reads or modifies the chadoprop table
gmod_extract_dbxref_from_gff.pl(1p) Extracts Dbxrefs from GFF3 lines that have Target attributes
gmod_fasta2gff3.pl(1p) Convert FASTA to simple GFF3
gmod_gff3_preprocessor.pl(1p) Prepares a GFF3 file for bulk loading into a chado database.
gmod_load_cvterms.pl(1p) compares which terms are new in the file compared to the database and inserts them
gmod_make_cvtermpath.pl(1p) calculates the transitive closure on the ontology terms in the cvterm table
gmod_make_gff_from_dbxref.pl(1p) a tool for creating a gff3 file given a list of dbxrefs and fasta files.
gmod_materialized_view_tool.pl(1p) a tool for creating and mangaing materialized views for Chado.
gmod_sort_gff3.pl(1p) Sorts a GFF3 file to put lines with Parent tags after their parent.
gmt-music(1p)
go-apply-xslt(1p) apply GO XSL on OBO-XML
go-dag-summary(1p) summarises an ontology
go-export-graph(1p) exports a graph
go-filter-subset(1p) extracts a subgraph from an ontology file
go-show-assocs-by-node(1p) find association for a GO term
go-show-paths-to-root(1p) shows all possible paths from a term to the top
go2error_report(1p) converts go/obo to error_report
go2fmt(1p) conversion tool and its wrappers
googlism(1p) Search Googlism.com
gpgmailtunl(1p) Encrypts an email message into the body of another email.
gram-ga.pl(1p) Command-line interface to An Gramadóir
graph-easy(1p) render/convert graphs in/from various formats
grepmail(1p) search mailboxes for mail matching a regular expression
groo-ga.pl(1p) Check the grammar of Irish language OpenOffice.org documents
gscan2pdf(1p) A GUI to produce PDFs or DjVus from scanned documents
gscriptor(1p) Perl script to send commands to a smart card using a Gtk GUI
gtf2gff3(1p) Converts GTF formatted files to valid GFF3 files
hostfiles(1p) A simple script to manage multiple sets of hostfiles on *NIX systems
html2pdf(1p) Convert HTML to PDF
html2wiki(1p) convert HTML into wiki markup
html_formfu_deploy.pl(1p) deploy local copy of HTML::FormFu template files
html_formfu_dumpconf.pl(1p) dump configuration files
htmlclean(1p) a small script to clean up existing HTML
htmlcopy(1p) - Copy a HTML file without breaking links.
htmltree(1p) Parse the given HTML file(s) and dump the parse tree
httprecorder(1p) quick script for recording HTTP traffic
hypertoc(1p) generate a table of contents for HTML documents
hypnotoad(1p) Hypnotoad HTTP and WebSocket server
imali(1p) display aliases for mail/news address
imcat(1p) display mail/news message
imcd(1p) change default folder of IM
imclean(1p) mail/news garbage cleanup
imget(1p) get mail/news messages
imgrep(1p) search for mail/news messages
imgsize(1p) read the dimensions of an image in several popular formats
imhist(1p) treat mail/news history database
imhsync(1p) refile mail/news messages by another DB
imjoin(1p) join Message/partial messages
imls(1p) list up the contents of the folder
immknmz(1p) make namazu index for mail folders
immv(1p) file mail/news message in other folders
impack(1p) pack mail/news messages in a folder
impath(1p) print full pathnames of a mail/news folder
importMetadata(1p) Script to import SAML federation metadata into LL::NG configuration
imput(1p) put mail/news message into networks
impwagent(1p) hold passwords for IM
imrm(1p) remove mail/news messages
imsetup(1p) setup for IM
imsort(1p) sort mail/news messages
imstore(1p) store mail/news message to a folder
imtar(1p) archiving utility for mail/news messages
index_dump(1p) Show the content of the index file
inline2test(1p) The Test::Inline 2 Test Compiler
inotify-hookable(1p) blocking command-line interface to inotify
intercalc(1p) CLC-INTERCAL desk calculator
ipv4calc(1p) Calculates IPv4 elements from an address.
iterative_cdhit(1p) Iteratively run cdhit
jabber-querybot(1p) a modular perl jabber bot
js_beautify(1p) command tool to beautify your javascript files
json-schema-eval(1p) A command-line interface to JSON::Schema::Modern::evaluate()
json_pp(1p) JSON::PP command utility
json_xs(1p) JSON::XS commandline utility
kephra(1p) Kephra starter script
kgb-add-project(1p) helper script for adding new projects to kgb-bot configuration file
kgb-bot(1p) an IRC bot helping collaborative work
kgb-ci-report(1p) put DebCI status of maintained packages on IRC
kgb-client(1p) relay commits to KGB servers
kgb-split-config(1p) helper script for splitting out project configurations
kioku(1p) command line wrapper around KiokuDB::Cmd
kwalitee-metrics(1p) list details of all kwalitee metrics installed on the system
l4p-tmpl(1p) Print out a Log4perl template configuration
langident(1p) identifies the language files are written in
latex-encode(1p) LaTeX-encode data
latex2dvi(1p) script to convert LaTeX file to DVI
latex2pdf(1p) script to convert LaTeX file to PDF
latex2ps(1p) script to convert LaTeX file to PostScript
latex2utf8(1p) converts LaTeX encoding to UTF-8
latexml(1p) transforms a TeX/LaTeX file into XML.
latexmlc(1p) An omni-executable for LaTeXML, capable of stand-alone, socket-server and web service conversion. Supports both core processing and post-processing.
latexmlfind(1p) finds interesting things in LaTeXML generated XML.
latexmlmath(1p) transforms a TeX/LaTeX math expression into various formats.
latexmlpost(1p) postprocesses an xml file generated by "latexml" to perform common tasks, such as convert math to images and processing graphics inclusions for the web.
lccnorm(1p) normalize Library of Congress Classification call numbers
lemonldap-ng-cli(1p) Command-line manager for Lemonldap::NG web-SSO system.
lemonldap-ng-sessions(1p) Scripting CLI for LemonLDAP::NG sessions
leo(1p) commandline interface to http://dict.leo.org/.
licensecheck(1p) simple license checker for source files
linked_data.psgi(1p) A simple Plack server for RDF as linked data
listfonts(1p) Print details of the fonts used in the PDF
listimages(1p) Save copies of all PDF JPG images to a directory
listpdffields(1p) Print the PDF form field names
load_genbank(1p) Load a Bio::DB::GFF database from GENBANK files.
local-debbugs(1p) use a local mirror of debbugs
lorem(1p) Generate random Latin looking text using Text::Lorem
ltpretty(1p) Use LaTeX::Table from within your text editor.
lwp-download(1p) Fetch large files from the web
lwp-dump(1p) See what headers and content is returned for a URL
lwp-mirror(1p) Simple mirror utility
lwp-request(1p) Simple command line user agent
mab2_convert(1p) converter for MAB2 formats
make-lingua-identify-language(1p) creates language modules for Lingua::Identify
make_das_conf(1p) Create GBrowse config files from DAS sources
make_encmap(1p) create an XML representation from an Unicode mapping file
make_method(1p) Turn Perl code into an XML description for RPC::XML::Server
makepatch(1p) create script to update a source tree
maketext(1p) translate and make messages
map2slim(1p) maps gene associations to a 'slim' ontology
marc2dc(1p) convert a MARC record to Dublin Core
marc2xml(1p) convert a MARC file to XML
marclint(1p) MARC record linting utility
marcvalidate(1p) Validate a file with MARC21 records
markdent-html(1p) Turn Markdown into HTML with Markdent
markdown(1p) Convert Markdown syntax to (X)HTML
mason.pl(1p) evaluate a mason template and output the result
masterha_check_repl(1p) Checking MySQL replication health
masterha_check_ssh(1p) Checking SSH connections
masterha_check_status(1p) Returns target MySQL master status monitored by MHA Manager
masterha_conf_host(1p) Adding new host entry to, or removing existing host entry from a config file
masterha_manager(1p) Monitoring MySQL master server availability and do failover if it detects master failure
masterha_master_monitor(1p) Monitoring MySQL master server availability
masterha_master_switch(1p) Switching MySQL master server to one of other slave servers
masterha_secondary_check(1p) Checking master availability from additional network routes
masterha_stop(1p) Stopping MHA Manager process
mc-encode(1p) use the Media::Convert library to transcode a file from one format to another
mcpani(1p) - A command line tool to manage a CPAN Mini Mirror.
mech-dump(1p) Dumps information about a web page
message-pass(1p) command line Message::Passing runner script
metabase-profile(1p) create a metabase profile
migrate-ebs-image(1p) Copy an EBS-backed Amazon Image from one region to another
mime-construct(1p) construct and optionally mail MIME messages
mimeopen(1p) Open files by mimetype
mimetype(1p) Determine file type
minicpan(1p) uses CPAN::Mini to create or update a local mirror
mkdtdskel(1p) DTD generator using XML::DT
mkdtskel(1p) Perl code skeleton generator to process XML files with XML::DT
mkpasswd.pl(1p) example to generate new password with String::MkPasswd
mkr2mrc(1p)
mkstatic(1p)
mkxmltype(1p) Make XML analysis using XML::DT
mod2html(1p) translate module PODs to HTML
modemtest(1p) Tool to examining your modem through Perl's Device::SerialPort
modpods(1p) print out paths for the standard modules
module-faker(1p) fake up CPAN distributions with Module::Faker
module-size(1p) - Spit out estimated size of module code.
module-starter(1p) creates a skeleton module distribution
module_info(1p) find information about modules
modulemaker(1p) interactive interface to ExtUtils::ModuleMaker; replaces "h2xs -AXn [module]"
modules-used(1p) List modules used by a set of Perl source files without running them.
mojo(1p) The Mojolicious command system
morbo(1p) Morbo HTTP and WebSocket development server
mp3cd(1p) Burns normalized audio CDs from lists of MP3s/WAVs/Oggs/FLACs
mp3info2(1p) get/set MP3 tags; uses MP3::Tag to get default values.
mpath(1p) display the full path to a perl module (installed locally)
mpd-dump-ratings(1p) dump mpd ratings & filter them
mpd-dynamic(1p) a dynamic playlist for mpd
mpd-rate(1p) rate your songs for mpd-dynamic
mqtt-simple(1p) Very simple MQTT implementation
mrc2mkr(1p)
mrest(1p) Web::MREST server startup script
mrest-cli(1p) Web::MREST demo/testing command-line client
msgconvert(1p) Convert Outlook .msg files to mbox format
msguntypot(1p) update PO files when a typo is fixed in POT file
mtpolicyd(1p) the mtpolicyd executable
multifilter(1p) Pandoc filter to apply filters listed in field "multifilter"
multimarkdown(1p) Convert MultiMarkdown syntax to (X)HTML
munin-node(1p) A daemon to gather information in cooperation with the main Munin program
munin-node-configure(1p) View and modify which plugins are enabled.
munin-run(1p) A program to run Munin plugins from the command line
munindoc(1p) Munin documentation
mvs(1p) A command line Mediawiki client
mymeta-cpanfile(1p) Dump cpanfile out of (MY)META files
mysql-schema-diff(1p) compare MySQL database schemas
nama(1p) multitrack recorder and digital audio workstation
net-server(1p) Base Net::Server starting module
ngrams(1p) Compute the ngram frequencies and produce tables to the stdout.
nicinfo(1p) print information about network interfaces
nytprofcg(1p) Convert an NYTProf profile into Callgrind format
nytprofcsv(1p) (DEPRECATED) Devel::NYTProf::Reader CSV format implementation
nytprofhtml(1p) Generate reports from Devel::NYTProf data
nytprofmerge(1p) Reads multiple NYTProf profiles and outputs a merged one
oai_browser(1p) Command line OAI repository browser
oai_pmh(1p) pipe OAI-PMH to the command-line
ocsinventory-agent(1p) Unified client for OCS-Inventory
odf2pod(1p) POD generation from an OpenDocument file
odf_set_fields(1p) Set names & values for user-defined fields
odf_set_title(1p) Set the title of a document using the first heading of the content
odfbuild(1p) OpenDocument file creation utility
odfextract(1p) Text selection and copy from one document to another one
odffilesearch(1p) File selection by keywords
odffindbasic(1p) Basic macro removal from OpenOffice.org files
odfhighlight(1p) search, replace and highlight text in a document
odfmetadoc(1p) Document properties management interface
odfsearch(1p) Text selection and copy from one document to another using callback
oodoc_test(1p) OpenOffice::OODoc test document generation
openpgp-applet(1p) GNOME applet for OpenPGP text encryption
paf(1p) Pod Abstract Filter. Transform Pod documents from the command line.
pan_genome_assembly_statistics(1p) Given a spreadsheet of gene presence and absence calculate some statistics
pan_genome_core_alignment(1p) Take in the group statistics spreadsheet and the location of the gene multifasta files and create a core alignment.
pan_genome_post_analysis(1p) Perform the post analysis on the pan genome
pan_genome_reorder_spreadsheet(1p) Take in a tree and a spreadsheet and output a reordered spreadsheet
pandoc-version(1p) switch pandoc executable
par-archive(1p) Make and run Perl Archives
parallel_all_against_all_blastp(1p) Take in a FASTA file of proteins and blast against itself
parcimonie(1p) privacy-friendly helper to refresh a GnuPG keyring
parl(1p) Binary PAR Loader
parsediasql(1p) Command-line interface to Parse::Dia::SQL
patchperl(1p) patch a perl source tree
pcapinfo(1p) Prints detailed information about the network devices
pdfbklt(1p) Turns documents into booklets
pdfinfo.cam-pdf(1p) Print information about PDF file(s)
pdfrevert(1p) Removes one layer of edits from a PDF file
pdfstamp(1p) Adds the given text in a given fonts, size to all pages at given location
pdict(1p) a perl client for accessing network dictionary servers
pdl2(1p) Simple shell (version 2) for PDL
PDL::API(1p) making ndarrays from Perl and C/XS code
PDL::BadValues(1p) Discussion of bad value support in PDL
PDL::Broadcasting(1p) Tutorial for PDL's Broadcasting feature
PDL::Course(1p) A journey through PDL's documentation, from beginner to advanced.
PDL::Dataflow(1p) - description of the dataflow implementation and philosophy
PDL::FAQ(1p) Frequently asked questions about PDL
PDL::Graphics(1p) Introduction to the PDL::Graphics modules
PDL::Indexing(1p) Introduction to indexing and slicing ndarrays.
PDL::Internals(1p) description of some aspects of the current internals
PDL::MATLAB(1p) A guide for MATLAB users.
PDL::Modules(1p) A guide to PDL's module reference.
PDL::Objects(1p) - Object-Orientation, what is it and how to exploit it
PDL::ParallelCPU(1p) Parallel processor multi-threading support in PDL
PDL::Philosophy(1p) - Why did we write PDL?
PDL::PP(1p) Generate PDL routines from concise descriptions
PDL::PP-Inline(1p) Write PDL Subroutines inline with PDL::PP
PDL::QuickStart(1p) Quick introduction to PDL features.
PDL::Scilab(1p) A guide for Scilab users.
PDL::Tips(1p) Small tidbits of useful arcana. Programming tidbits and such.
PDL::Tutorials(1p) A guide to PDL's tutorial documentation.
pdldoc(1p) shell interface to PDL documentation
percona-toolkit(1p) Advanced command-line tools for MySQL
perl-reversion(1p) Manipulate project version numbers
perl-stacktrace(1p) Stack trace
perl2html(1p) generate Perl documentation in HTML
perlanet(1p) command line interface to Perlanet.pm
perlbal(1p) Reverse-proxy load balancer and webserver
perlbrew(1p) Perl environment manager.
perlconsole(1p) light program that lets you evaluate Perl code interactively.
perlcritic(1p) Command-line interface to critique Perl source.
perldig(1p) Dig up keywords in the local Perl documentation
perldl(1p) Simple shell for PDL (see also pdl2)
perlfilter(1p) Source Filters
perli11ndoc(1p) view documentation of installed libraries bound using Glib::Object::Introspection
perlimports(1p) A command line utility for cleaning up imports in your Perl code
perlindex(1p) index and query perl manual pages
perlrdf(1p) perlrdf command line utils
perlsh(1p) one-line perl evaluator with line editing function and variable name completion function
perltidier(1p) Script to execute Perl::Tidy::Sweetened cleanup
perltidy(1p) a perl script indenter and reformatter
perltidy-sweet(1p) Script to execute Perl::Tidy::Sweetened cleanup
perlver(1p) The Perl Minimum Version Analyzer
perlver-fast(1p) Minimum perl version detector
pfcat(1p) grep out function definitions from perlfunc
pfunc(1p) grep for perl functions
pg_prove(1p) A command-line tool for running and harnessing pgTAP tests
pg_tapgen(1p) Generate schema TAP tests from an existing database
pgbadger(1p) a fast PostgreSQL log analysis report
pgcluu(1p) PostgreSQL Cluster utilization
pherkin(1p) Execute tests written using Test::BDD::Cucumber
pinto(1p) Curate a custom repository of Perl modules
pintod(1p) Web interface to a Pinto repository
pirl(1p) A read-eval-print loop in Perl (see Shell::Perl)
pkgjs-utils(1p) Nodejs package utilities
pkwalify(1p) Kwalify schema for data structures
plackup(1p) Run PSGI application with Plack handlers
plxload(1p) show what files a perl program loads at compile time
pm-uninstall(1p) Uninstall modules
pm_which(1p) find installed modules
pmall(1p) show all installed versions and descs
pman(1p) show a module's man page
pmat(1p) Perl Memory Analysis Tool
pmat-diff(1p) print a list of SVs unique to each of two given files
pmcat(1p) page through a module file
pmcheck(1p) check that Perl is set up correctly for Perl modules
pmdesc(1p) print out version and whatis description of perl modules
pmeth(1p) show a Perl class's methods
pmexp(1p) show a module's exports
pmfunc(1p) cat out a function from a module
pminclude(1p) show the include path for modules (@INC)
pminst(1p) find modules whose names match this pattern
pmload(1p) show what files a given module loads at compile time
pmls(1p) long list the module path
pmpath(1p) show full path to a perl module
pmvers(1p) print out a module's version
pnginspect(1p) print contents of PNG files
po4a(1p) update both the PO files and translated documents in one shot
po4a-gettextize(1p) convert an original file (and its translation) to a PO file
po4a-normalize(1p) normalize a documentation file by parsing it in po4a, and writing it back
po4a-translate(1p) convert a PO file back to documentation format
po4a-updatepo(1p) update the translation (in PO format) of documentation
pod-minimumversion(1p) - report minimum Perl version for given POD
pod2docbook(1p) Convert POD data to DocBook SGML
pod2latex(1p) convert pod documentation to latex format
pod2markdown(1p) Convert POD text to Markdown
pod2pandoc(1p) convert Pod to Pandoc document model
pod2pdf(1p) converts Pod to PDF format
pod2projdocs(1p) generates CPAN like project documents from pod.
pod2readme(1p) Intelligently generate a README file from POD
pod2rst(1p) convert .pod files to .rst files
pod2sdf(1p) converts POD to SDF markup
pod2test(1p) (DEPRECATED) Convert embedded tests and code examples to .t files
pod2thread(1p) Convert POD data to the HTML macro language thread.
pod2wiki(1p) A utility to convert Pod documents to Wiki format.
pod2xhtml(1p) convert .pod files to .xhtml files
podgrep(1p) grep in pod sections only
podindex(1p) build index from pods
podlint(1p) check POD for correctness using Pod::POM
podpath(1p) print the path to the Pod
pods(1p) print out all pod paths
pods2html(1p) translate a tree of PODs to HTML
podselect(1p) print selected sections of pod documentation on standard output
podspell(1p) pod spell checking command line interface
podtoc(1p) show outline of pods
podtree2html(1p) translate a POD to HTML
poe-gen-tests(1p) generate standard POE tests for third-party modules
poet(1p) main Poet command-line interface
policyd-client(1p) commandline client to query a policyd server
pom2(1p) convert POD to Text, HTML, etc., with Pod::POM
pomdump(1p) dump the POM parse tree for a POD document
ppit(1p) pit for perl
ppkg-config(1p) Pure-Perl Core-Only replacement for pkg-config
pptemplate(1p) script to generate Makefile.PL and PP file skeleton
primer_designer(1p) - command-line interface Bio::PrimerDesigner
prolix(1p) trim chatty command outputs
protein_alignment_from_nucleotides(1p) Take in multi-FASTA files of nucleotides and align each file with PRANK or MAFFT
prove(1p) Run tests through a TAP harness.
prt(1p) Command line frontend of App::PRT
pt-align(1p) Align output from other tools to columns.
pt-archiver(1p) Archive rows from a MySQL table into another table or a file.
pt-config-diff(1p) Diff MySQL configuration files and server variables.
pt-deadlock-logger(1p) Log MySQL deadlocks.
pt-diskstats(1p) An interactive I/O monitoring tool for GNU/Linux.
pt-duplicate-key-checker(1p) Find duplicate indexes and foreign keys on MySQL tables.
pt-fifo-split(1p) Split files and pipe lines to a fifo without really splitting.
pt-find(1p) Find MySQL tables and execute actions, like GNU find.
pt-fingerprint(1p) Convert queries into fingerprints.
pt-fk-error-logger(1p) Log MySQL foreign key errors.
pt-heartbeat(1p) Monitor MySQL replication delay.
pt-index-usage(1p) Read queries from a log and analyze how they use indexes.
pt-ioprofile(1p) Watch process IO and print a table of file and I/O activity.
pt-kill(1p) Kill MySQL queries that match certain criteria.
pt-mext(1p) Look at many samples of MySQL "SHOW GLOBAL STATUS" side-by-side.
pt-mysql-summary(1p) Summarize MySQL information nicely.
pt-online-schema-change(1p) ALTER tables without locking them.
pt-pmp(1p) Aggregate GDB stack traces for a selected program.
pt-query-digest(1p) Analyze MySQL queries from logs, processlist, and tcpdump.
pt-show-grants(1p) Canonicalize and print MySQL grants so you can effectively replicate, compare and version-control them.
pt-sift(1p) Browses files created by pt-stalk.
pt-slave-delay(1p) Make a MySQL slave server lag behind its master.
pt-slave-find(1p) Find and print replication hierarchy tree of MySQL slaves.
pt-slave-restart(1p) Watch and restart MySQL replication after errors.
pt-stalk(1p) Collect forensic data about MySQL when problems occur.
pt-summary(1p) Summarize system information nicely.
pt-table-checksum(1p) Verify MySQL replication integrity.
pt-table-sync(1p) Synchronize MySQL table data efficiently.
pt-table-usage(1p) Analyze how queries use tables.
pt-upgrade(1p) Verify that query results are identical on different servers.
pt-variable-advisor(1p) Analyze MySQL variables and advise on possible problems.
pt-visual-explain(1p) Format EXPLAIN output as a tree.
ptked(1p) an editor in Perl/Tk
ptksh(1p) Perl/Tk script to provide a graphical user interface for testing Perl/Tk commands and scripts.
ptsb(1p) Interact with you Permanent TSB homebanking from your shell!
publican(1p) a DocBook XML publishing tool.
purge_relay_logs(1p) Deleting relay logs without blocking SQL threads
px2_configure(1p) deploy and configure Raritan PX2/PX3 power distribution units
query_pan_genome(1p) Take in a groups file and the protein fasta files and output selected data
Querytest(1p) Test framework without jabber connection
razor-admin(1p) Razor Registering Agent
razor-check(1p) Razor Filtering Agent
razor-client(1p) Meta program for the razor utilities
razor-report(1p) Razor Reporting Agent
razor-revoke(1p) Razor Revoking Agent
rdfns(1p)
readpdf(1p) Read a PDF document
regexp-assemble(1p) Assemble a list of regular expressions from a file
rem2pdf(1p) draw a PDF calendar from Remind output
remove_tradis_tags(1p) remove user specified tags from start of fastq sequences
renderpdf(1p) Applies a renderer to one or more PDF pages
renrot(1p) rename and rotate images according EXIF data
replacepdfobj(1p) Copy a metadata object from one PDF to another
reply(1p) read, eval, print, loop, yay!
revertpdf(1p) Remove the last edits to a PDF document
rewritepdf(1p) Rebuild a PDF file
rex(1p) execute tasks defined in a Rexfile
rexify(1p) {{ SHORT DESCRIPTION }}
rivescript(1p) A command line frontend to the Perl RiveScript interpreter.
roary(1p) Create a pan genome from a set of GFF files
roary-pan_genome_reorder_spreadsheet(1p) Take in a tree and a spreadsheet and output a reordered spreadsheet
roary-query_pan_genome(1p) Take in a groups file and the protein fasta files and output selected data
roary-unique_genes_per_sample(1p) Take in the clustered file and produce a sorted file with the frequency of each samples unique genes
rqsh(1p) SPARQL database shell
s3acl(1p) Display or manipulate the ACL of AWS S3 buckets and items
s3cl(1p) Command line for Amazon s3 cloud storage
s3get(1p) Retrieve contents of S3 items
s3ls(1p) List S3 buckets and bucket contents
s3mkbucket(1p) Create Amazon AWS S3 buckets
s3put(1p) Write an S3 item
s3rm(1p) Delete Amazon AWS S3 items
s3rmbucket(1p) Delete Amazon AWS S3 buckets
sa-awl(1p) examine and manipulate SpamAssassin's auto-welcomelist db
sa-check_spamd(1p) spamd monitoring script for use with Nagios, etc.
sa-compile(1p) compile SpamAssassin ruleset into native code
sa-learn(1p) train SpamAssassin's Bayesian classifier
sa-update(1p) automate SpamAssassin rule updates
save_binary_logs(1p) Concatenating binary or relay logs from the specified file/position to the end of the log. This command is automatically executed from MHA Manager on failover, and manual execution should not be needed normally.
scan-copyrights(1p) Scan source file and print lines for debian/copyright files
scan-perl-prereqs(1p) scan your working dir for likely prereqs
scan-perl-prereqs-nqlite(1p)
scan_mojibake(1p) scan Perl source and report bad character encoding
scandeps(1p) Scan file prerequisites
schema2example(1p) convert XML schema knowledge into Perl or XML examples
schwartzmon(1p) monitor The Schwartz
scrappy(1p) The Scrappy Command-Line Utility
scriptor(1p) Perl script to send commands to a smart card
scrobbler-helper(1p) submit a track to AudioScrobbler
search_overview(1p) - Render a SearchIO parser report into a simple overview graphic
send-reminders(1p) send email reminders for special occasions
sendxmpp(1p) send xmpp messages from the commandline.
sepl(1p) - a Term::ReadLine-based Sepia interactive shell.
session-token(1p) command-line script for generating session tokens
setpdfbackground(1p) Apply a background color to a PDF page
setpdfpage(1p) Replace a page of PDF layout
sgf2dg(1p) convert Smart Go Format (SGF) files to diagrams similar to those seen in Go books and magazines.
sgfsplit(1p) split Smart Go Format (SGF) files into their component variations
sha3sum(1p) Print or Check SHA-3 Checksums
shasum(1p) Print or Check SHA Checksums
shell-quote(1p) quote arguments for safe use, unmodified in a shell command
shelldap(1p) A program for interacting with an LDAP server via a shell-like interface
show_all_colors(1p) show all available colors from Term::ExtendedColor, in color
showtable(1p) Show data in nicely formatted columns
sick(1p) Compiler for CLC-INTERCAL
simple2zoom(1p) generic Swiss Army Server for proxying between IR standards
sitepods(1p) print out the paths to the modules that this site added
snmpkey(1p) Create SNMPv3 security keys for the Net::SNMP module
SOAPsh(1p) Interactive shell for SOAP calls
socket_getaddrinfo(1p) command-line tool to "getaddrinfo(3)" resolver
socket_getnameinfo(1p) command-line tool to "getnameinfo(3)" resolver
solid_auth(1p) A Solid management tool
spamalyze(1p) Apply multiple Realtime Blackhole Lists to all messages in an mbox
spamassassin(1p) extensible email filter used to identify spam
spamassassin-run(1p) simple front-end filtering script for SpamAssassin
spfquery.mail-spf-perl(1p) (Mail::SPF) - Checks if a given set of e-mail parameters matches a domain's SPF policy
sql-split(1p) SQL splitting command line utility
sqlrw(1p) - Reserved SQL words by standard and vendors.
sqlt(1p) convert SQL schema using SQL::Translator
sqlt-diagram(1p) Automatically create a diagram from a database schema
sqlt-diff(1p) find the differences b/w two schemas
sqlt-diff-old(1p) find the differences b/w two schemas
sqlt-dumper(1p) create a dumper script from a schema
sqlt-graph(1p) Automatically create a graph from a database schema
sreview-config(1p) manage the SReview configuration
sreview-cut(1p) cut a talk out of the raw recording data
sreview-detect(1p) detect new files for SReview
sreview-dispatch(1p) Watch the database for talks that need work done, and schedule jobs for them
sreview-import(1p) Import an event schedule from an event's upstream
sreview-notranscode(1p) copy the output of sreview-cut into media files without transcodes or credits
sreview-previews(1p) create previews from the "sreview-cut" output
sreview-skip(1p) skip a state in the SReview video review system
sreview-transcode(1p) transcode the output of sreview-cut into production-quality media files
sreview-user(1p) SReview user management
srs(1p) command line interface to Mail::SRS
srsc(1p) a trivial commandline interface to srsd.
srsd(1p) daemon interface to Mail::SRS
sslh(1p) Switch incoming connection between SSH and SSL/HTTPS servers
stag-autoddl(1p) wrapper for the Data::Stag modules
stag-autoschema(1p) writes the implicit stag-schema for a stag file
stag-autotemplate(1p) Generates Stag SQL Templates files
stag-db(1p) persistent storage and retrieval for stag data (xml, sxpr, itext)
stag-diff(1p) finds the difference between two stag files
stag-drawtree(1p) draws a stag file (xml, itext, sxpr) as a PNG diagram
stag-filter(1p) filters a stag file (xml, itext, sxpr) for nodes of interest
stag-findsubtree(1p) finds nodes in a stag file
stag-flatten(1p) turns stag data into a flat table
stag-grep(1p) filters a stag file (xml, itext, sxpr) for nodes of interest
stag-handle(1p) streams a stag file through a handler into a writer
stag-ir(1p) information retrieval using a simple relational index
stag-itext2simple(1p) converts between stag formats
stag-itext2sxpr(1p) converts between stag formats
stag-itext2xml(1p) converts between stag formats
stag-join(1p) joins two stag files together based around common key
stag-merge(1p) script wrapper for the Data::Stag modules
stag-mogrify(1p) mangle stag files
stag-parse(1p) parses a file and fires events (e.g. sxpr to xml)
stag-qsh(1p) DBStag query shell
stag-query(1p) aggregare queries
stag-selectall_html(1p) select all elements from database
stag-selectall_xml(1p) Query all elements from database with an XML output
stag-splitter(1p) splits a stag file into multiple files
stag-storenode(1p) script is for storing data in database
stag-view(1p) draws an expandable Tk tree diagram showing stag data
stag-xml2itext(1p) converts between stag formats
stamppdf(1p) Apply a mark to each page of a PDF
starman(1p) Starman launcher
start_server(1p) a superdaemon for hot-deploying server programs
stdpods(1p) print out the paths to the modules that came with Perl
storage-merge-dots(1p) merge dot files created by storage2dot, adding inter links if possible
storage2dot(1p) analyse and generate a graphical view of a machine storage
stream_ttyrec(1p) play a ttyrec to a termcast channel
streamzip(1p) create a zip file from stdin
strip-nondeterminism(1p) strip nondeterministic information from files
stubmaker(1p) Generates client stubs from a WSDL file.
subs(1p) convert, join, split, and re-time subtitles
svnnotify(1p) Subversion activity notification
svnweb-install(1p) SVN::Web installation helper
swatchdog(1p) simple watcher
syslogd-sendtest.pl(1p) Syslog Message Tests
syslogd-simple.pl(1p) Simple Syslog Server
systray-mdstat(1p) system tray icon which shows the state of local MD RAIDs
tab2graph(1p) turn tabular data into a graph
tablify(1p) turn a delimited text file into a text table
tabmerge(1p) unify delimited files on common fields
tag2thesaurus(1p) transform a tagdictionary into a thesaurus
tap2junit(1p) Converts TAP output to JUnit
tax2thesaurus(1p) indented taxonomy to thesaurus
Telsearch(1p) tel.search.ch
termcast(1p) broadcast your terminal sessions for remote viewing
test-regexp-pattern(1p) Test Regexp::Pattern patterns in all modules of your distro
test_version(1p) check that all Perl modules in a distribution have version numbers
text2odf(1p) Text to OpenDocument conversion
text2table(1p) flat text conversion to OpenDocument spreadsheet
textile(1p) Translate Textile markup language to HTML
textrr(1p) rewrite rules compiler
theft-server(1p) CLC-INTERCAL networking
thesaurus2any(1p) translate thesaurus like notation to xml catalogue format
thesaurus2htmls(1p) generates a HTML site (one file for each term)
thesaurus2tex(1p) ISO-Thesaurus completion and LaTeX translator
thesaurusTranslate(1p) Change baselanguage of a thesaurus ISO...
tidy_changelog(1p) command-line tool for CPAN::Changes
tidyall(1p) Your all-in-one code tidier and validator
timed-process(1p) Run background process for limited amount of time
titanium-starter(1p) creates a skeleton Titanium project
tkdict(1p) a perl client for accessing network dictionary servers
tkjpeg(1p) simple JPEG viewer using perl/Tk
tkmore(1p) a Perl/Tk based pager
tkpod(1p) Perl/Tk Pod browser
tmx-explode(1p) Explodes tmx files in a file per language
tmx-POStagger(1p) POStaggers translation units on a tmx file.
tmx-tokenize(1p) Tokenizes translation units on a tmx file.
tmx2html(1p) Converts a TMX to an HTML formatted page
tmx2tmx(1p) Utility to convert and filter TMX files
tmxclean(1p) Simple tool to clean TMX files
tmxgrep(1p) grep translation units in a TMX file
tmxsplit(1p) Splits a TMX file several files, one for each language
tmxuniq(1p) removes duplicated translation units from TMXs
tmxwc(1p) Gives statistics about tmx file.
Toppreise(1p) toppreise.ch
tpage(1p) Process templates from command line
tradis_gene_insert_sites(1p) Generate insertion site details from TraDIS pipeline plots
tradis_plot(1p) Generate plots as part of a tradis analysis
transfer_annotation_to_groups(1p) Take in a groups file and a set of GFF files and transfer the consensus annotation
transform-fdt(1p) transform .fdt files to new file format
translit(1p) transliterate text between various writing systems
treescan(1p) scan directory trees, list dirs/files, stat, sync, grep
tsv2tmx(1p) Create a TMX from a TSV file
ttree(1p) Process entire directory trees of templates
tv_augment(1p) Augment XMLTV listings files with automatic and user-defined rules.
tv_augment_tz(1p) Convert floating time to explicit time.
tv_cat(1p) Concatenate XMLTV listings files.
tv_check(1p) Check TV guide listings
tv_count(1p) Count (and print) the number of channels and programmes in an XMLTV file.
tv_extractinfo_ar(1p) read Spanish (Argentinean) language listings and extract info from programme descriptions.
tv_extractinfo_en(1p) read English-language listings and extract info from programme descriptions.
tv_find_grabbers(1p) Find all XMLTV grabbers that are installed on the system.
tv_grab_ch_search(1p) Grab TV listings for Switzerland (from tv.search.ch webpage).
tv_grab_combiner(1p) Grab listings by combining data from several grabbers.
tv_grab_fi(1p) Grab TV listings for Finland
tv_grab_fi_sv(1p) Grab TV listings for Finland in Swedish.
tv_grab_fr(1p) Grab TV listings for France (Télé Star).
tv_grab_huro(1p) Grab TV listings for Hungary or Romania.
tv_grab_is(1p) Grab TV listings for Iceland.
tv_grab_it(1p) Grab TV listings for Italy.
tv_grab_it_dvb(1p) Grab TV listings for Italy from the DVB-S stream
tv_grab_na_dd(1p) Grab TV listings for North America using Schedules Direct http://www.schedulesdirect.org
tv_grab_na_tvmedia(1p) Grab TV listings for North America.
tv_grab_pt_vodafone(1p) Grab TV listings for Vodafone in Portugal
tv_grab_uk_freeview(1p) Grab TV listings for UK (Freeview).
tv_grab_zz_sdjson(1p) Grab TV listings from Schedules Direct SD-JSON service.
tv_grab_zz_sdjson_sqlite(1p) Grab TV and radio program listings from Schedules Direct (subscription required).
tv_grep(1p) Filter programmes and channels from an XMLTV listings file.
tv_imdb(1p) Augment XMLTV listings files with imdb.com data.
tv_merge(1p) Merge (combine) two XMLTV files.
tv_remove_some_overlapping(1p) Remove some overlapping programmes from XMLTV data.
tv_sort(1p) Sort XMLTV listings files by date, and add stop times.
tv_split(1p) Split XMLTV listings into separate files by date and channel.
tv_tmdb(1p) Augment XMLTV listings files with themoviedb.org data.
tv_to_latex(1p) Convert XMLTV listings to LaTeX source.
tv_to_potatoe(1p) Convert XMLTV listings to potatoe format.
tv_to_text(1p) Convert XMLTV listings to text.
tv_validate_file(1p) Validate that a file contains valid xmltv data.
tv_validate_grabber(1p) Validate that an xmltv grabber works correctly
twiggy(1p) Twiggy launcher
txt2html(1p) convert plain text file to HTML
typeset_audio_dir(1p) produce TeX listing of directories with audio files.
ucsc_genes2gff(1p) Convert UCSC Genome Browser-format gene files into GFF files suitable for loading into gbrowse
ujconv(1p) - reinvented iconv(1) using Unicode::Japanese
ujguess(1p) - Guess encoding of given files
umap(1p) map between different character sets
uncolor(1p) strip input from attached colors and attributes
uninlinepdfimages(1p) Save copies of all PDF JPG images to a directory
ur(1p) command-line interface to UR
urifind(1p) find URIs in a document and dump them to STDOUT.
use-devel-checklib(1p) (DEPRECATED)a script to package Devel::CheckLib with your code.
validxml(1p) Command-line driver for XML::Validate.
vcheck(1p) latest program version checker and auto-downloader
vhier(1p) Return all files in a verilog hierarchy using Verilog::Netlist
vnccapture(1p) Capture a screenshot via VNC
vpassert(1p) Preprocess Verilog code assertions
vppreproc(1p) Preprocess Verilog code using verilog-perl
vrename(1p) change signal names across many Verilog files
wApua(1p) web browser for WAP WML pages
wbmp2xbm(1p) converts WBMP to XBM
wdq(1p) command line access to Wikidata Query Service
WebSearch(1p) a web-searching application demonstrating WWW::Search
webtidy5(1p) HTML validation tool
whiff(1p) like which, but finds the first of all the given alternatives
whirlpoolsum(1p) Print or check WHIRLPOOL checksums
widget(1p) Demonstration of Perl/Tk widgets
wiggle2gff3(1p) Converts UCSC WIG format files into gff3 files
wiki-toolkit-delete-node(1p) Delete a node stored in a Wiki::Toolkit instance.
wiki-toolkit-rename-node(1p) Rename a node stored in a Wiki::Toolkit instance.
wiki-toolkit-revert-to-date(1p) Revert the state of a Wiki::Toolkit instance to an earlier point in time.
wiki-toolkit-setupdb(1p) Set up a database storage backend for Wiki::Toolkit.
wikipedia(1p) lookup an entry in the wikipedia
Woerterbuch(1p) woerterbuch.info
wsdl2perl(1p) create perl bindings for SOAP webservices.
wxperl_overload(1p) create overload declarations for wxPerl extensions
xgettext-tt2(1p) Extract translatable strings from Template Toolkit 2 templates
xgettext-txt(1p) Create PO files from text files
xgettext.pl(1p) Extract translatable strings from source
xgettextdbi(1p) Fetch values for translation from a database
xml2json(1p) convert an XML message with a schema into JSON
xml2marc(1p) convert LC SlimSchema XML to MARC21
xml2yaml(1p) convert an XML message with a schema into YAML
xml_grep(1p) grep XML files looking for specific elements
xml_merge(1p) merge back XML files split with C<xml_split>
xml_pp(1p) xml pretty-printer
xml_spellcheck(1p) spellcheck XML files
xml_split(1p) cut a big XML file into smaller chunks
xmlpretty(1p) XML pretty printer
xmlsort(1p) sorts 'records' in XML files
xmltidy(1p) tidy an XML document
xpath(1p) a script to query XPath statements in XML documents.
xslate(1p) Process Xslate Templates
xspp(1p) XS++ preprocessor
xupdate(1p) Process XUpdate commands over an XML document
yapp(1p) A perl frontend to the Parse::Yapp module
yath(1p) Primary Command Line Interface (CLI) for Test2::Harness
youtube-download(1p) youtube-download - Download video(s) from YouTube
youtube-playlists(1p) Find YouTube video URLs from playlist(s)
ysh(1p) The YAML Test Shell
zipdetails(1p) display the internal structure of zip files
zonemaster-cli(1p) run Zonemaster tests from the command line
zxcvbn-password-strength(1p) evaluate password strength